IL_9J1M_091

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_091 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.1268

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9J1M|1|A|C|2704
9J1M|1|A|C|2705
9J1M|1|A|A|2706
9J1M|1|A|A|2707
9J1M|1|A|G|2708
*
9J1M|1|A|C|2718
9J1M|1|A|G|2719
9J1M|1|A|A|2720
9J1M|1|A|C|2721
9J1M|1|A|G|2722

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain M

Large ribosomal subunit protein uL16