IL_9J1M_116

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9J1M|1|a|G|67, 9J1M|1|a|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_116 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2808

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

9J1M|1|a|C|66
9J1M|1|a|G|67
9J1M|1|a|A|68
9J1M|1|a|A|69
*
9J1M|1|a|U|98
9J1M|1|a|G|99

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20