IL_9J1M_120

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGAU*AG

Length

6 nucleotides

Bulged bases

9J1M|1|a|G|125, 9J1M|1|a|A|126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_120 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.1442

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9J1M|1|a|U|124
9J1M|1|a|G|125
9J1M|1|a|A|126
9J1M|1|a|U|127
*
9J1M|1|a|A|230
9J1M|1|a|G|231

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20