IL_9J1M_121

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_121 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.1117

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9J1M|1|a|C|128
9J1M|1|a|U|129
9J1M|1|a|G|130
9J1M|1|a|C|131
9J1M|1|a|C|132
*
9J1M|1|a|G|226
9J1M|1|a|A|227
9J1M|1|a|U|228
9J1M|1|a|G|229

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20