IL_9J1M_129

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

9J1M|1|a|U|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_129 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.1713

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9J1M|1|a|G|408
9J1M|1|a|G|409
9J1M|1|a|A|410
9J1M|1|a|U|411
9J1M|1|a|G|412
9J1M|1|a|A|413
9J1M|1|a|C|414
9J1M|1|a|G|415
*
9J1M|1|a|U|426
9J1M|1|a|G|427
9J1M|1|a|U|428
9J1M|1|a|A|429
9J1M|1|a|A|430
9J1M|1|a|A|431
9J1M|1|a|C|432

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4