IL_9J1M_131

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGACG*CGGUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_131 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1216

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9J1M|1|a|C|445
9J1M|1|a|G|446
9J1M|1|a|A|447
9J1M|1|a|C|448
9J1M|1|a|G|449
*
9J1M|1|a|C|474
9J1M|1|a|G|475
9J1M|1|a|G|476
9J1M|1|a|U|477
9J1M|1|a|A|478
9J1M|1|a|G|479

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain p

Small ribosomal subunit protein bS16