IL_9J1M_136
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 9J1M|1|a|A|563
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_136 not in the Motif Atlas
- Geometric match to IL_5J7L_026
- Geometric discrepancy: 0.0741
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|a|C|560
9J1M|1|a|G|561
9J1M|1|a|U|562
9J1M|1|a|A|563
9J1M|1|a|A|564
9J1M|1|a|A|565
9J1M|1|a|G|566
*
9J1M|1|a|C|873
9J1M|1|a|G|874
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain e
- Small ribosomal subunit protein uS5
- Chain l
- Small ribosomal subunit protein uS12
- Chain q
- Small ribosomal subunit protein uS17
- Chain x
- Mitochondrial domain of uncharacterised function (DUF1713)
Coloring options: