IL_9J1M_139
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GU*AUAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_139 not in the Motif Atlas
- Geometric match to IL_4LFB_025
- Geometric discrepancy: 0.1326
- The information below is about IL_4LFB_025
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 29
Unit IDs
9J1M|1|a|G|588
9J1M|1|a|U|589
*
9J1M|1|a|A|631
9J1M|1|a|U|632
9J1M|1|a|A|633
9J1M|1|a|C|634
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain q
- Small ribosomal subunit protein uS17
Coloring options: