IL_9J1M_147

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_147 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0664

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9J1M|1|a|C|770
9J1M|1|a|G|771
9J1M|1|a|A|772
9J1M|1|a|A|773
9J1M|1|a|C|774
*
9J1M|1|a|G|790
9J1M|1|a|G|791
9J1M|1|a|U|792
9J1M|1|a|A|793
9J1M|1|a|G|794

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain C

Large ribosomal subunit protein uL2

Chain k

Small ribosomal subunit protein uS11