3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
UCU*AUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9J1M_156 not in the Motif Atlas
Geometric match to IL_4V9F_105
Geometric discrepancy: 0.1185
The information below is about IL_4V9F_105
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

9J1M|1|a|U|1003
9J1M|1|a|C|1004
9J1M|1|a|U|1005
*
9J1M|1|a|A|1010
9J1M|1|a|U|1011
9J1M|1|a|A|1012

Current chains

Chain a
16S rRNA

Nearby chains

Chain n
Small ribosomal subunit protein uS14B
Chain s
Small ribosomal subunit protein uS19

Coloring options:


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