IL_9J1M_167
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGAUG*UUAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_167 not in the Motif Atlas
- Geometric match to IL_5J7L_056
- Geometric discrepancy: 0.2443
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
9J1M|1|a|C|1251
9J1M|1|a|G|1252
9J1M|1|a|A|1253
9J1M|1|a|U|1254
9J1M|1|a|G|1255
*
9J1M|1|a|U|1264
9J1M|1|a|U|1265
9J1M|1|a|A|1266
9J1M|1|a|A|1267
9J1M|1|a|G|1268
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain s
- Small ribosomal subunit protein uS19
Coloring options: