IL_9J3T_003

3D structure

PDB id

9J3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA octamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J3T_003 not in the Motif Atlas

Geometric match to IL_3R1D_014

Geometric discrepancy: 0.1685

The information below is about IL_3R1D_014

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9J3T|1|A|U|85
9J3T|1|A|G|86
9J3T|1|A|A|87
*
9J3T|1|A|U|102
9J3T|1|A|G|103
9J3T|1|A|A|104

Current chains

Chain A

RNA (580-MER)

Nearby chains