IL_9J3T_094

3D structure

PDB id

9J3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA octamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAGAAA*UGUUUAACGAAAGAAGUCGGUACGAGUAGCUUAAU

Length

42 nucleotides

Bulged bases

9J3T|1|G|A|310, 9J3T|1|G|U|329, 9J3T|1|G|A|331, 9J3T|1|G|A|357, 9J3T|1|G|A|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9J3T|1|G|A|306
9J3T|1|G|G|307
9J3T|1|G|A|308
9J3T|1|G|G|309
9J3T|1|G|A|310
9J3T|1|G|A|311
9J3T|1|G|A|312
*
9J3T|1|G|U|325
9J3T|1|G|G|326
9J3T|1|G|U|327
9J3T|1|G|U|328
9J3T|1|G|U|329
9J3T|1|G|A|330
9J3T|1|G|A|331
9J3T|1|G|C|332
9J3T|1|G|G|333
9J3T|1|G|A|334
9J3T|1|G|A|335
9J3T|1|G|A|336
9J3T|1|G|G|337
9J3T|1|G|A|338
9J3T|1|G|A|339
9J3T|1|G|G|340
9J3T|1|G|U|341
9J3T|1|G|C|342
9J3T|1|G|G|343
9J3T|1|G|G|344
9J3T|1|G|U|345
9J3T|1|G|A|346
9J3T|1|G|C|347
9J3T|1|G|G|348
9J3T|1|G|A|349
9J3T|1|G|G|350
9J3T|1|G|U|351
9J3T|1|G|A|352
9J3T|1|G|G|353
9J3T|1|G|C|354
9J3T|1|G|U|355
9J3T|1|G|U|356
9J3T|1|G|A|357
9J3T|1|G|A|358
9J3T|1|G|U|359

Current chains

Chain G

RNA (580-MER)

Nearby chains

Chain H

ROOL RNA