IL_9JNS_011

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JNS_011 not in the Motif Atlas

Geometric match to IL_8B0X_076

Geometric discrepancy: 0.1672

The information below is about IL_8B0X_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9JNS|1|A|G|536
9JNS|1|A|G|537
9JNS|1|A|A|538
9JNS|1|A|G|539
*
9JNS|1|A|U|554
9JNS|1|A|G|555
9JNS|1|A|A|556
9JNS|1|A|C|557

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20