IL_9JNS_016

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

9JNS|1|A|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JNS_016 not in the Motif Atlas

Geometric match to IL_8B0X_087

Geometric discrepancy: 0.2677

The information below is about IL_8B0X_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79144.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9JNS|1|A|A|844
9JNS|1|A|A|845
9JNS|1|A|U|846
9JNS|1|A|U|847
*
9JNS|1|A|A|933
9JNS|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30