IL_9JNS_036

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

9JNS|1|A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JNS_036 not in the Motif Atlas

Geometric match to IL_8OI5_079

Geometric discrepancy: 0.2339

The information below is about IL_8OI5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9JNS|1|A|G|1666
9JNS|1|A|G|1667
9JNS|1|A|A|1668
9JNS|1|A|A|1669
9JNS|1|A|C|1670
9JNS|1|A|U|1671
9JNS|1|A|A|1672
9JNS|1|A|G|1673
9JNS|1|A|G|1674
*
9JNS|1|A|C|1990
9JNS|1|A|U|1991
9JNS|1|A|G|1992
9JNS|1|A|U|1993
9JNS|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14