IL_9JPM_017

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPM_017 not in the Motif Atlas

Homologous match to IL_6CZR_127

Geometric discrepancy: 0.191

The information below is about IL_6CZR_127

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

9JPM|1|A|A|371
9JPM|1|A|C|372
9JPM|1|A|A|373
9JPM|1|A|A|374
9JPM|1|A|U|375
*
9JPM|1|A|A|389
9JPM|1|A|U|390

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16