IL_9JPM_018

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

9JPM|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPM_018 not in the Motif Atlas

Homologous match to IL_6CZR_358

Geometric discrepancy: 0.2388

The information below is about IL_6CZR_358

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

9JPM|1|A|U|375
9JPM|1|A|G|376
*
9JPM|1|A|U|387
9JPM|1|A|G|388
9JPM|1|A|A|389

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16