IL_9JPM_073

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPM_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3831

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9JPM|1|a|C|274
9JPM|1|a|C|275
9JPM|1|a|U|276
9JPM|1|a|G|277
9JPM|1|a|A|278
9JPM|1|a|A|279
9JPM|1|a|U|280
9JPM|1|a|C|281
*
9JPM|1|a|G|359
9JPM|1|a|U|360
9JPM|1|a|G|361
9JPM|1|a|A|362
9JPM|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains