IL_9JPM_114

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9JPM|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPM_114 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.5248

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

9JPM|1|a|C|1417
9JPM|1|a|G|1418
9JPM|1|a|A|1419
9JPM|1|a|A|1420
9JPM|1|a|G|1421
*
9JPM|1|a|C|1577
9JPM|1|a|U|1578
9JPM|1|a|A|1579
9JPM|1|a|A|1580
9JPM|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains