IL_9JPO_074

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_074 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.2786

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9JPO|1|a|C|274
9JPO|1|a|C|275
9JPO|1|a|U|276
9JPO|1|a|G|277
9JPO|1|a|A|278
9JPO|1|a|A|279
9JPO|1|a|U|280
9JPO|1|a|C|281
*
9JPO|1|a|G|359
9JPO|1|a|U|360
9JPO|1|a|G|361
9JPO|1|a|A|362
9JPO|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains