IL_9JPO_083

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

9JPO|1|a|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_083 not in the Motif Atlas

Homologous match to IL_7A0S_017

Geometric discrepancy: 0.133

The information below is about IL_7A0S_017

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

9JPO|1|a|U|702
9JPO|1|a|U|703
*
9JPO|1|a|G|728
9JPO|1|a|G|729
9JPO|1|a|A|730

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2