IL_9JPO_084

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_084 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.0752

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9JPO|1|a|U|703
9JPO|1|a|G|704
9JPO|1|a|A|705
9JPO|1|a|A|706
9JPO|1|a|G|707
*
9JPO|1|a|U|724
9JPO|1|a|G|725
9JPO|1|a|G|726
9JPO|1|a|A|727
9JPO|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2