IL_9JPO_086

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9JPO|1|a|G|776, 9JPO|1|a|A|788, 9JPO|1|a|A|789, 9JPO|1|a|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_086 not in the Motif Atlas

Geometric match to IL_8B0X_085

Geometric discrepancy: 0.0397

The information below is about IL_8B0X_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9JPO|1|a|G|775
9JPO|1|a|G|776
9JPO|1|a|G|777
*
9JPO|1|a|C|787
9JPO|1|a|A|788
9JPO|1|a|A|789
9JPO|1|a|U|790
9JPO|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain r

50S ribosomal protein L22