IL_9JPO_095

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_095 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.1677

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9JPO|1|a|G|875
9JPO|1|a|C|876
9JPO|1|a|A|877
9JPO|1|a|A|878
9JPO|1|a|G|879
*
9JPO|1|a|C|898
9JPO|1|a|A|899
9JPO|1|a|A|900
9JPO|1|a|C|901
9JPO|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16