IL_9JPP_011

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPP_011 not in the Motif Atlas

Geometric match to IL_8B0X_011

Geometric discrepancy: 0.1319

The information below is about IL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9JPP|1|A|G|144
9JPP|1|A|G|145
9JPP|1|A|G|146
*
9JPP|1|A|C|176
9JPP|1|A|G|177
9JPP|1|A|C|178

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20