IL_9JPP_021

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9JPP|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPP_021 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.0733

The information below is about IL_8B0X_021

Detailed Annotation

tWW-tWH-tHS

Broad Annotation

tWW-tWH-tHS

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9JPP|1|A|G|446
9JPP|1|A|G|447
9JPP|1|A|A|448
9JPP|1|A|G|449
9JPP|1|A|G|450
*
9JPP|1|A|C|483
9JPP|1|A|G|484
9JPP|1|A|U|485
9JPP|1|A|U|486
9JPP|1|A|A|487
9JPP|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16