IL_9JPP_094
3D structure
- PDB id
- 9JPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9JPP_094 not in the Motif Atlas
- Geometric match to IL_4V9F_085
- Geometric discrepancy: 0.1789
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.3
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9JPP|1|a|G|875
9JPP|1|a|C|876
9JPP|1|a|A|877
9JPP|1|a|A|878
9JPP|1|a|G|879
*
9JPP|1|a|C|898
9JPP|1|a|A|899
9JPP|1|a|A|900
9JPP|1|a|C|901
9JPP|1|a|C|902
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain V
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: