IL_9JPP_102

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9JPP|1|a|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPP_102 not in the Motif Atlas

Homologous match to IL_7A0S_038

Geometric discrepancy: 0.2321

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9JPP|1|a|G|1031
9JPP|1|a|A|1032
9JPP|1|a|U|1033
9JPP|1|a|G|1034
*
9JPP|1|a|C|1121
9JPP|1|a|G|1122
9JPP|1|a|C|1123

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16