IL_9JQ2_073

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JQ2_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3704

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9JQ2|1|a|C|274
9JQ2|1|a|C|275
9JQ2|1|a|U|276
9JQ2|1|a|G|277
9JQ2|1|a|A|278
9JQ2|1|a|A|279
9JQ2|1|a|U|280
9JQ2|1|a|C|281
*
9JQ2|1|a|G|359
9JQ2|1|a|U|360
9JQ2|1|a|G|361
9JQ2|1|a|A|362
9JQ2|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains