IL_9JQ2_076

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JQ2_076 not in the Motif Atlas

Geometric match to IL_8B0X_076

Geometric discrepancy: 0.0634

The information below is about IL_8B0X_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9JQ2|1|a|G|536
9JQ2|1|a|G|537
9JQ2|1|a|A|538
9JQ2|1|a|G|539
*
9JQ2|1|a|U|554
9JQ2|1|a|G|555
9JQ2|1|a|A|556
9JQ2|1|a|C|557

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20