IL_9JSR_033

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

9JSR|1|A|U|1379

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JSR_033 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.3202

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9JSR|1|A|C|1351
9JSR|1|A|U|1352
9JSR|1|A|A|1353
9JSR|1|A|A|1354
9JSR|1|A|G|1355
*
9JSR|1|A|C|1376
9JSR|1|A|G|1377
9JSR|1|A|A|1378
9JSR|1|A|U|1379
9JSR|1|A|G|1380

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34