IL_9K0Z_009

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAU*GG

Length

6 nucleotides

Bulged bases

9K0Z|1|A|G|126, 9K0Z|1|A|A|127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_009 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.1275

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9K0Z|1|A|U|125
9K0Z|1|A|G|126
9K0Z|1|A|A|127
9K0Z|1|A|U|128
*
9K0Z|1|A|G|231
9K0Z|1|A|G|232

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20