IL_9K0Z_019

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

9K0Z|1|A|U|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_019 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.1823

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9K0Z|1|A|G|409
9K0Z|1|A|G|410
9K0Z|1|A|A|411
9K0Z|1|A|U|412
9K0Z|1|A|G|413
9K0Z|1|A|A|414
9K0Z|1|A|C|415
9K0Z|1|A|G|416
*
9K0Z|1|A|U|427
9K0Z|1|A|G|428
9K0Z|1|A|U|429
9K0Z|1|A|A|430
9K0Z|1|A|A|431
9K0Z|1|A|A|432
9K0Z|1|A|C|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4