IL_9K0Z_025

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9K0Z|1|A|A|552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_025 not in the Motif Atlas

Geometric match to IL_5J7L_026

Geometric discrepancy: 0.0877

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9K0Z|1|A|C|549
9K0Z|1|A|G|550
9K0Z|1|A|U|551
9K0Z|1|A|A|552
9K0Z|1|A|A|553
9K0Z|1|A|A|554
9K0Z|1|A|G|555
*
9K0Z|1|A|C|862
9K0Z|1|A|G|863

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17