IL_9K0Z_043

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_043 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3673

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

9K0Z|1|A|A|984
9K0Z|1|A|G|985
*
9K0Z|1|A|C|1017
9K0Z|1|A|C|1018
9K0Z|1|A|U|1019

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3