IL_9K0Z_055

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAUG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_055 not in the Motif Atlas

Geometric match to IL_2A64_006

Geometric discrepancy: 0.2215

The information below is about IL_2A64_006

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9K0Z|1|A|C|1240
9K0Z|1|A|G|1241
9K0Z|1|A|A|1242
9K0Z|1|A|U|1243
9K0Z|1|A|G|1244
*
9K0Z|1|A|U|1253
9K0Z|1|A|G|1254
9K0Z|1|A|G|1255
9K0Z|1|A|A|1256
9K0Z|1|A|G|1257

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S

Small ribosomal subunit protein uS19