IL_9K0Z_062

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_062 not in the Motif Atlas

Geometric match to IL_5J7L_062

Geometric discrepancy: 0.1451

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9K0Z|1|A|A|1399
9K0Z|1|A|A|1400
9K0Z|1|A|A|1401
9K0Z|1|A|G|1402
*
9K0Z|1|A|C|1465
9K0Z|1|A|G|1466
9K0Z|1|A|A|1467
9K0Z|1|A|U|1468

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain h

Large subunit ribosomal RNA; LSU rRNA