IL_9K0Z_066

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGGC*GAG

Length

7 nucleotides

Bulged bases

9K0Z|1|A|G|1425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_066 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1845

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9K0Z|1|A|U|1423
9K0Z|1|A|G|1424
9K0Z|1|A|G|1425
9K0Z|1|A|C|1426
*
9K0Z|1|A|G|1443
9K0Z|1|A|A|1444
9K0Z|1|A|G|1445

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20

Chain w

50S ribosomal protein L19