IL_9K0Z_070

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9K0Z|1|B|A|67

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_070 not in the Motif Atlas

Geometric match to IL_4WF9_112

Geometric discrepancy: 0.2391

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9K0Z|1|B|C|18
9K0Z|1|B|G|19
*
9K0Z|1|B|C|66
9K0Z|1|B|A|67
9K0Z|1|B|G|68

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain h

Large subunit ribosomal RNA; LSU rRNA

Chain v

Large ribosomal subunit protein uL18