IL_9K0Z_073
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUCCC*GAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K0Z_073 not in the Motif Atlas
- Geometric match to IL_5NS3_002
- Geometric discrepancy: 0.1224
- The information below is about IL_5NS3_002
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
9K0Z|1|B|G|35
9K0Z|1|B|U|36
9K0Z|1|B|C|37
9K0Z|1|B|C|38
9K0Z|1|B|C|39
*
9K0Z|1|B|G|45
9K0Z|1|B|A|46
9K0Z|1|B|A|47
9K0Z|1|B|C|48
9K0Z|1|B|C|49
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain g
- Large ribosomal subunit protein bL31
- Chain h
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL5
- Chain v
- Large ribosomal subunit protein uL18
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