IL_9K0Z_093

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_093 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.1068

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9K0Z|1|h|C|787
9K0Z|1|h|C|788
9K0Z|1|h|G|789
*
9K0Z|1|h|C|921
9K0Z|1|h|U|922
9K0Z|1|h|G|923

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL4

Chain s

Large ribosomal subunit protein uL15