IL_9K0Z_106

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

9K0Z|1|h|U|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_106 not in the Motif Atlas

Geometric match to IL_4WF9_033

Geometric discrepancy: 0.1208

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.2

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9K0Z|1|h|G|979
9K0Z|1|h|C|980
9K0Z|1|h|U|981
9K0Z|1|h|A|982
9K0Z|1|h|C|983
9K0Z|1|h|U|984
*
9K0Z|1|h|A|1024
9K0Z|1|h|A|1025
9K0Z|1|h|A|1026
9K0Z|1|h|C|1027

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain t

Large ribosomal subunit protein uL16