IL_9K0Z_110

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

9K0Z|1|h|G|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_110 not in the Motif Atlas

Geometric match to IL_4LVW_002

Geometric discrepancy: 0.3368

The information below is about IL_4LVW_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9K0Z|1|h|G|1066
9K0Z|1|h|G|1067
*
9K0Z|1|h|U|1084
9K0Z|1|h|G|1085
9K0Z|1|h|C|1086

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain B

5S ribosomal RNA; 5S rRNA

Chain a

Large ribosomal subunit protein uL30