IL_9K0Z_116
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9K0Z|1|h|U|1245, 9K0Z|1|h|U|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K0Z_116 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1278
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9K0Z|1|h|G|1142
9K0Z|1|h|G|1143
9K0Z|1|h|A|1144
9K0Z|1|h|A|1145
9K0Z|1|h|A|1146
9K0Z|1|h|A|1147
9K0Z|1|h|G|1148
*
9K0Z|1|h|C|1242
9K0Z|1|h|G|1243
9K0Z|1|h|A|1244
9K0Z|1|h|U|1245
9K0Z|1|h|A|1246
9K0Z|1|h|A|1247
9K0Z|1|h|U|1248
9K0Z|1|h|G|1249
9K0Z|1|h|U|1250
9K0Z|1|h|A|1251
9K0Z|1|h|G|1252
9K0Z|1|h|C|1253
9K0Z|1|h|G|1254
9K0Z|1|h|G|1255
9K0Z|1|h|G|1256
9K0Z|1|h|G|1257
9K0Z|1|h|C|1258
Current chains
- Chain h
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein bL37
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L36
- Chain j
- Large ribosomal subunit protein uL3
- Chain q
- Large ribosomal subunit protein uL13
- Chain t
- Large ribosomal subunit protein uL16
Coloring options: