IL_9K0Z_117

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9K0Z|1|h|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_117 not in the Motif Atlas

Geometric match to IL_7A0S_038

Geometric discrepancy: 0.1404

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9K0Z|1|h|G|1149
9K0Z|1|h|A|1150
9K0Z|1|h|U|1151
9K0Z|1|h|G|1152
*
9K0Z|1|h|C|1239
9K0Z|1|h|G|1240
9K0Z|1|h|C|1241

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L36

Chain m

Large ribosomal subunit protein uL6

Chain t

Large ribosomal subunit protein uL16