IL_9K0Z_120

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9K0Z|1|h|A|1206

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_120 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2835

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9K0Z|1|h|G|1205
9K0Z|1|h|A|1206
9K0Z|1|h|G|1207
9K0Z|1|h|U|1208
9K0Z|1|h|G|1209
*
9K0Z|1|h|C|1218
9K0Z|1|h|U|1219
9K0Z|1|h|C|1220

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L36

Chain p

Large ribosomal subunit protein uL11