IL_9K0Z_124
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K0Z_124 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.0948
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9K0Z|1|h|A|1377
9K0Z|1|h|U|1378
9K0Z|1|h|G|1379
9K0Z|1|h|A|1380
9K0Z|1|h|G|1381
9K0Z|1|h|U|1382
9K0Z|1|h|A|1383
9K0Z|1|h|G|1384
*
9K0Z|1|h|C|2235
9K0Z|1|h|G|2236
9K0Z|1|h|A|2237
9K0Z|1|h|A|2238
9K0Z|1|h|A|2239
9K0Z|1|h|U|2240
9K0Z|1|h|U|2241
Current chains
- Chain h
- 23S ribosomal RNA
Nearby chains
- Chain b
- Large ribosomal subunit protein bL32
- Chain k
- Large ribosomal subunit protein uL4
- Chain x
- Large ribosomal subunit protein bL20
- Chain z
- Large ribosomal subunit protein uL22
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