IL_9K0Z_128

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_128 not in the Motif Atlas

Geometric match to IL_5J7L_293

Geometric discrepancy: 0.0911

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9K0Z|1|h|C|1472
9K0Z|1|h|G|1473
9K0Z|1|h|A|1474
9K0Z|1|h|G|1475
9K0Z|1|h|G|1476
*
9K0Z|1|h|C|1485
9K0Z|1|h|G|1486
9K0Z|1|h|U|1487
9K0Z|1|h|A|1488
9K0Z|1|h|G|1489

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein bL34

Chain i

Large ribosomal subunit protein uL2