IL_9K0Z_138

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9K0Z|1|h|A|1710

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_138 not in the Motif Atlas

Geometric match to IL_7DLZ_002

Geometric discrepancy: 0.3801

The information below is about IL_7DLZ_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9K0Z|1|h|U|1709
9K0Z|1|h|A|1710
9K0Z|1|h|G|1711
*
9K0Z|1|h|C|1719
9K0Z|1|h|G|1720

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain i

Large ribosomal subunit protein uL2